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» Sequence Comparison Using a Relational Database Approach
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JPDC
2007
167views more  JPDC 2007»
13 years 7 months ago
On the design of high-performance algorithms for aligning multiple protein sequences on mesh-based multiprocessor architectures
In this paper, we address the problem of multiple sequence alignment (MSA) for handling very large number of proteins sequences on mesh-based multiprocessor architectures. As the ...
Diana H. P. Low, Bharadwaj Veeravalli, David A. Ba...
AIMSA
2006
Springer
13 years 11 months ago
Using Verbs to Characterize Noun-Noun Relations
Abstract. We present a novel, simple, unsupervised method for characterizing the semantic relations that hold between nouns in noun-noun compounds. The main idea is to discover pre...
Preslav Nakov, Marti A. Hearst
ICDE
2004
IEEE
179views Database» more  ICDE 2004»
14 years 9 months ago
CrossMine: Efficient Classification Across Multiple Database Relations
Most of today's structured data is stored in relational databases. Such a database consists of multiple relations which are linked together conceptually via entity-relationsh...
Xiaoxin Yin, Jiawei Han, Jiong Yang, Philip S. Yu
BMCBI
2010
172views more  BMCBI 2010»
13 years 7 months ago
Accessing the SEED genome databases via Web services API: tools for programmers
Background: The SEED integrates many publicly available genome sequences into a single resource. The database contains accurate and up-to-date annotations based on the subsystems ...
Terry Disz, Sajia Akhter, Daniel Cuevas, Robert Ol...
BMCBI
2008
104views more  BMCBI 2008»
13 years 7 months ago
Comparison of methods for estimating the nucleotide substitution matrix
Background: The nucleotide substitution rate matrix is a key parameter of molecular evolution. Several methods for inferring this parameter have been proposed, with different math...
Maribeth Oscamou, Daniel McDonald, Von Bing Yap, G...