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» Sequence Comparison Using a Relational Database Approach
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BMCBI
2005
150views more  BMCBI 2005»
13 years 7 months ago
Approaching the taxonomic affiliation of unidentified sequences in public databases - an example from the mycorrhizal fungi
Background: During the last few years, DNA sequence analysis has become one of the primary means of taxonomic identification of species, particularly so for species that are minut...
R. Henrik Nilsson, Erik Kristiansson, Martin Ryber...
CCGRID
2005
IEEE
14 years 1 months ago
Secret sequence comparison on public grid computing resources
Once a new gene has been sequenced, it must be verified whether or not it is similar to previously sequenced genes. In many cases, the organization that sequenced a potentially n...
Ken-ichi Kurata, Hiroshi Nakamura, Vincent Breton
BMCBI
2004
119views more  BMCBI 2004»
13 years 7 months ago
Identification of polymorphic tandem repeats by direct comparison of genome sequence from different bacterial strains : a web-ba
Background: Polymorphic tandem repeat typing is a new generic technology which has been proved to be very efficient for bacterial pathogens such as B. anthracis, M. tuberculosis, ...
France Denoeud, Gilles Vergnaud
SIGMOD
2004
ACM
162views Database» more  SIGMOD 2004»
14 years 7 months ago
Graph Indexing: A Frequent Structure-based Approach
Graph has become increasingly important in modelling complicated structures and schemaless data such as proteins, chemical compounds, and XML documents. Given a graph query, it is...
Xifeng Yan, Philip S. Yu, Jiawei Han
CIKM
2005
Springer
14 years 1 months ago
Detecting changes on unordered XML documents using relational databases: a schema-conscious approach
Several relational approaches have been proposed to detect the changes to XML documents by using relational databases. These approaches store the XML documents in the relational d...
Erwin Leonardi, Sourav S. Bhowmick