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» Sequence Comparison Using a Relational Database Approach
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ISMB
1997
13 years 9 months ago
Identifying Chimerism in Proteins Using Hidden Markov Models of Codon Usage
Protein chimerism is a phenomenon involving the combination of multiple ancestral sequences into a single, multi-domain protein through evolution. We propose a novel method for de...
Lawrence Hunter, Barry Zeeberg
CORR
2010
Springer
181views Education» more  CORR 2010»
13 years 6 months ago
Mapping XML Data to Relational Data: A DOM-Based Approach
XML has emerged as the standard for representing and exchanging data on the World Wide Web. It is critical to have efficient mechanisms to store and query XML data to exploit the...
Mustafa Atay, Yezhou Sun, Dapeng Liu, Shiyong Lu, ...
CSIE
2009
IEEE
14 years 2 months ago
Identifying DNA Strands Using a Kernel of Classified Sequences
— Automated DNA sequencing produces a large amount of raw DNA sequence data that then needs to be classified, organized, and annotation. One major application is the comparison o...
Guillermo Tonsmann, David D. Pollock, Wanjun Gu, T...
HICSS
1994
IEEE
157views Biometrics» more  HICSS 1994»
13 years 11 months ago
A Protein Family Classification Method for Analysis of Large DNA Sequences
A method is described for identification and classification of proteins encoded in large DNA sequences. Previously, an automated system was introduced for the general detection of...
Steven Henikoff, Jorja G. Henikoff
BMCBI
2005
133views more  BMCBI 2005»
13 years 7 months ago
Systematic determination of the mosaic structure of bacterial genomes: species backbone versus strain-specific loops
Background: Public databases now contain multitude of complete bacterial genomes, including several genomes of the same species. The available data offers new opportunities to add...
Hélène Chiapello, I. Bourgait, F. So...