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» Sequence Database Search Using Jumping Alignments
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131
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NAR
2006
119views more  NAR 2006»
15 years 2 months ago
ChloroplastDB: the Chloroplast Genome Database
The Chloroplast Genome Database (ChloroplastDB) is an interactive, web-based database for fully sequenced plastid genomes, containing genomic, protein, DNA and RNA sequences, gene...
Liying Cui, Narayanan Veeraraghavan, Alexander Ric...
217
Voted
ICDE
2000
IEEE
82views Database» more  ICDE 2000»
16 years 3 months ago
Similarity Search for Multidimensional Data Sequences
Time-series data, which are a series of one-dimensional real numbers, have been studied in various database applications. In this paper, we extend the traditional similarity searc...
Seok-Lyong Lee, Seok-Ju Chun, Deok-Hwan Kim, Ju-Ho...
BMCBI
2008
109views more  BMCBI 2008»
15 years 2 months ago
ConStruct: Improved construction of RNA consensus structures
Background: Aligning homologous non-coding RNAs (ncRNAs) correctly in terms of sequence and structure is an unresolved problem, due to both mathematical complexity and imperfect s...
Andreas Wilm, Kornelia Linnenbrink, Gerhard Steger
196
Voted
AIPS
2011
14 years 6 months ago
Searching for Plans with Carefully Designed Probes
We define a probe to be a single action sequence computed greedily from a given state that either terminates in the goal or fails. We show that by designing these probes carefull...
Nir Lipovetzky, Hector Geffner
BMCBI
2006
120views more  BMCBI 2006»
15 years 2 months ago
Optimizing amino acid substitution matrices with a local alignment kernel
Background: Detecting remote homologies by direct comparison of protein sequences remains a challenging task. We had previously developed a similarity score between sequences, cal...
Hiroto Saigo, Jean-Philippe Vert, Tatsuya Akutsu