612 search results - page 36 / 123 » Sequence Database Search Using Jumping Alignments |
105
Voted
IPPS
2008
IEEE
15 years 9 months ago
2008
IEEE
This paper presents a seed-based algorithm for intensive DNA sequence comparison. The novelty comes from the way seeds are used to efficiently generate small ungapped alignments ...
148
click to vote
NAR
2008
15 years 2 months ago
2008
MALISAM (manual alignments for structurally analogous motifs) represents the first database containing pairs of structural analogs and their alignments. To find reliable analogs, ...
128
Voted
BMCBI
2010
15 years 2 months ago
2010
Background: With the rapid expansion of DNA sequencing databases, it is now feasible to identify relevant information from prior sequencing projects and completed genomes and appl...
143
Voted
BMCBI
2008
15 years 2 months ago
2008
Background: The most common substitution matrices currently used (BLOSUM and PAM) are based on protein sequences with average amino acid distributions, thus they do not represent ...
108
Voted
CISIS
2010
IEEE
15 years 9 months ago
2010
IEEE
—Sequence alignment is a fundamental instrument in Bioinformatics. In recent years, numerous proposals have been addressing the problem of accelerating this class of applications...