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» Sequence Database Search Using Jumping Alignments
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DEXA
2009
Springer
167views Database» more  DEXA 2009»
15 years 9 months ago
Alignment of Noisy and Uniformly Scaled Time Series
The alignment of noisy and uniformly scaled time series is an important but difficult task. Given two time series, one of which is a uniformly stretched subsequence of the other, w...
Constanze Lipowsky, Egor Dranischnikow, Herbert G&...
239
Voted
ICDE
2003
IEEE
149views Database» more  ICDE 2003»
16 years 4 months ago
Indexing Weighted-Sequences in Large Databases
We present an index structure for managing weightedsequences in large databases. A weighted-sequence is defined as a two-dimensional structure where each element in the sequence i...
Haixun Wang, Chang-Shing Perng, Wei Fan, Sanghyun ...
ICDE
2008
IEEE
162views Database» more  ICDE 2008»
16 years 4 months ago
Querying Complex Spatio-Temporal Sequences in Human Motion Databases
Content-based retrieval of spatio-temporal patterns from human motion databases is inherently nontrivial since finding effective distance measures for such data is difficult. These...
Yueguo Chen, Shouxu Jiang, Beng Chin Ooi, Anthony ...
129
Voted
HPDC
2006
IEEE
15 years 8 months ago
Exploring I/O Strategies for Parallel Sequence-Search Tools with S3aSim
Parallel sequence-search tools are rising in popularity among computational biologists. With the rapid growth of sequence databases, database segmentation is the trend of the futu...
Avery Ching, Wu-chun Feng, Heshan Lin, Xiaosong Ma...
145
Voted
ISMB
2003
15 years 4 months ago
PSI: indexing protein structures for fast similarity search
We consider the problem of finding similarities in protein structure databases. Our techniques extract feature vectors on triplets of SSEs (Secondary Structure Elements). Later, ...
Orhan Çamoglu, Tamer Kahveci, Ambuj K. Sing...