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» Sequence Database Search Using Jumping Alignments
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119
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ICCS
2009
Springer
15 years 9 months ago
A Massively Parallel Architecture for Bioinformatics
Abstract. Today’s general purpose computers lack in meeting the requirements on computing performance for standard applications in bioinformatics like DNA sequence alignment, err...
Gerd Pfeiffer, Stefan Baumgart, Jan Schröder,...
119
Voted
VLDB
2007
ACM
141views Database» more  VLDB 2007»
15 years 8 months ago
UQLIPS: A Real-time Near-duplicate Video Clip Detection System
Near-duplicate video clip (NDVC) detection is an important problem with a wide range of applications such as TV broadcast monitoring, video copyright enforcement, content-based vi...
Heng Tao Shen, Xiaofang Zhou, Zi Huang, Jie Shao, ...
134
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KDD
2008
ACM
115views Data Mining» more  KDD 2008»
16 years 3 months ago
SPIRAL: efficient and exact model identification for hidden Markov models
Hidden Markov models (HMMs) have received considerable attention in various communities (e.g, speech recognition, neurology and bioinformatic) since many applications that use HMM...
Yasuhiro Fujiwara, Yasushi Sakurai, Masashi Yamamu...
118
Voted
ICASSP
2009
IEEE
15 years 9 months ago
DNA coding using finite-context models and arithmetic coding
The interest in DNA coding has been growing with the availability of extensive genomic databases. Although only two bits are sufficient to encode the four DNA bases, efficient l...
Armando J. Pinho, António J. R. Neves, Carl...
BMCBI
2006
124views more  BMCBI 2006»
15 years 2 months ago
Predicting transcription factor binding sites using local over-representation and comparative genomics
Background: Identifying cis-regulatory elements is crucial to understanding gene expression, which highlights the importance of the computational detection of overrepresented tran...
Matthieu Defrance, Hélène Touzet