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» Sequence Database Search Using Jumping Alignments
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NAR
2006
75views more  NAR 2006»
15 years 2 months ago
OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups
The OrthoMCL database (http://orthomcl.cbil.upenn. edu) houses ortholog group predictions for 55 spe10 cies, including 16 bacterial and 4 archaeal genomes representing phylogeneti...
Feng Chen, Aaron J. Mackey, Christian J. Stoeckert...
123
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GECCO
2007
Springer
258views Optimization» more  GECCO 2007»
15 years 6 months ago
TFBS identification by position- and consensus-led genetic algorithm with local filtering
Identification of Transcription Factor Binding Site (TFBS) motifs in multiple DNA upstream sequences is important in understanding the mechanism of gene regulation. This identific...
Tak-Ming Chan, Kwong-Sak Leung, Kin-Hong Lee
117
Voted
ICDM
2005
IEEE
168views Data Mining» more  ICDM 2005»
15 years 8 months ago
Discovering Frequent Arrangements of Temporal Intervals
In this paper we study a new problem in temporal pattern mining: discovering frequent arrangements of temporal intervals. We assume that the database consists of sequences of even...
Panagiotis Papapetrou, George Kollios, Stan Sclaro...
106
Voted
ICDAR
2009
IEEE
15 years 9 months ago
Keyword Spotting in Document Images through Word Shape Coding
With large databases of document images available, a method for users to find keywords in documents will be useful. One approach is to perform Optical Character Recognition (OCR) ...
Shuyong Bai, Linlin Li, Chew Lim Tan
162
Voted
BMCBI
2011
14 years 9 months ago
SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects
Background: High-throughput re-sequencing, new genotyping technologies and the availability of reference genomes allow the extensive characterization of Single Nucleotide Polymorp...
Alexis Dereeper, Stéphane Nicolas, Loic Le ...