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JCB
2002
116views more  JCB 2002»
13 years 7 months ago
A Novel Approach to Remote Homology Detection: Jumping Alignments
We describe a new algorithm for protein classi cation and the detection of remote homologs. The rationale is to exploit both vertical and horizontal information of a multiple alig...
Rainer Spang, Marc Rehmsmeier, Jens Stoye
KDD
2008
ACM
115views Data Mining» more  KDD 2008»
14 years 7 months ago
SPIRAL: efficient and exact model identification for hidden Markov models
Hidden Markov models (HMMs) have received considerable attention in various communities (e.g, speech recognition, neurology and bioinformatic) since many applications that use HMM...
Yasuhiro Fujiwara, Yasushi Sakurai, Masashi Yamamu...
ICMCS
2007
IEEE
128views Multimedia» more  ICMCS 2007»
13 years 7 months ago
A Vector-Based Approach to Broadcast Audio Database Indexing and Retrieval
This paper proposes a novel framework to index and retrieve audio content from broadcast database that contains both speech and music. In this framework, we model the acoustic eve...
Lei Wang, Haizhou Li, Engsiong Chng
BMCBI
2011
13 years 2 months ago
Accurate statistics for local sequence alignment with position-dependent scoring by rare-event sampling
Background: Molecular database search tools need statistical models to assess the significance for the resulting hits. In the classical approach one asks the question how probable...
Stefan Wolfsheimer, Inke Herms, Sven Rahmann, Alex...
BMCBI
2005
100views more  BMCBI 2005»
13 years 7 months ago
Evolutionary models for insertions and deletions in a probabilistic modeling framework
Background: Probabilistic models for sequence comparison (such as hidden Markov models and pair hidden Markov models for proteins and mRNAs, or their context-free grammar counterp...
Elena Rivas