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BMCBI
2011
14 years 11 months ago
ASPDock: protein-protein docking algorithm using atomic solvation parameters model
Background: Atomic Solvation Parameters (ASP) model has been proven to be a very successful method of calculating the binding free energy of protein complexes. This suggests that ...
Lin Li, Dachuan Guo, Yangyu Huang, Shiyong Liu, Yi...
ICDM
2008
IEEE
176views Data Mining» more  ICDM 2008»
15 years 11 months ago
Inlier-Based Outlier Detection via Direct Density Ratio Estimation
We propose a new statistical approach to the problem of inlier-based outlier detection, i.e., finding outliers in the test set based on the training set consisting only of inlier...
Shohei Hido, Yuta Tsuboi, Hisashi Kashima, Masashi...
132
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ESA
2006
Springer
111views Algorithms» more  ESA 2006»
15 years 8 months ago
Path Hitting in Acyclic Graphs
An instance of the path hitting problem consists of two families of paths, D and H, in a common undirected graph, where each path in H is associated with a non-negative cost. We r...
Ojas Parekh, Danny Segev
JCC
2011
154views more  JCC 2011»
14 years 7 months ago
Can we trust docking results? Evaluation of seven commonly used programs on PDBbind database
: Docking is one of the most commonly used techniques in drug design. It is used for both identifying correct poses of a ligand in the binding site of a protein as well as for the ...
Dariusz Plewczynski, Michal Lazniewski, Rafal Augu...
BMCBI
2005
94views more  BMCBI 2005»
15 years 4 months ago
Reproducible Clusters from Microarray Research: Whither?
Motivation: In cluster analysis, the validity of specific solutions, algorithms, and procedures present significant challenges because there is no null hypothesis to test and no &...
Nikhil R. Garge, Grier P. Page, Alan P. Sprague, B...