Sciweavers

516 search results - page 6 / 104
» Sets of k-Independent Strings
Sort
View
ALGORITHMICA
2010
95views more  ALGORITHMICA 2010»
13 years 7 months ago
Homogeneous String Segmentation using Trees and Weighted Independent Sets
We divide a string into k segments, each with only one sort of symbols, so as to minimize the total number of exceptions. Motivations come from machine learning and data mining. F...
Peter Damaschke
BMCBI
2008
214views more  BMCBI 2008»
13 years 7 months ago
Accelerating String Set Matching in FPGA Hardware for Bioinformatics Research
Background: This paper describes techniques for accelerating the performance of the string set matching problem with particular emphasis on applications in computational proteomic...
Yoginder S. Dandass, Shane C. Burgess, Mark Lawren...
DLT
2008
13 years 9 months ago
Universal Recursively Enumerable Sets of Strings
The present work clarifies the relation between domains of universal machines and r.e. prefix-free supersets of such sets. One such characterisation can be obtained in terms of the...
Cristian S. Calude, André Nies, Ludwig Stai...
BMCBI
2010
86views more  BMCBI 2010»
13 years 7 months ago
Fast motif recognition via application of statistical thresholds
Background: Improving the accuracy and efficiency of motif recognition is an important computational challenge that has application to detecting transcription factor binding sites...
Christina Boucher, James King
BIBE
2007
IEEE
174views Bioinformatics» more  BIBE 2007»
14 years 1 months ago
Shortest Path Approaches for the Longest Common Subsequence of a Set of Strings
—We investigate the k-LCS problem that is finding a longest common subsequence (LCS) for k given input strings. The problem is known to have practical solutions for k = 2, but f...
Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upt...