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» Sets of k-Independent Strings
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UAI
2004
13 years 10 months ago
Case-Factor Diagrams for Structured Probabilistic Modeling
We introduce a probabilistic formalism subsuming Markov random fields of bounded tree width and probabilistic context free grammars. Our models are based on a representation of Bo...
David A. McAllester, Michael Collins, Fernando Per...
IJHIS
2006
94views more  IJHIS 2006»
13 years 8 months ago
A new fine-grained evolutionary algorithm based on cellular learning automata
In this paper, a new evolutionary computing model, called CLA-EC, is proposed. This model is a combination of a model called cellular learning automata (CLA) and the evolutionary ...
Reza Rastegar, Mohammad Reza Meybodi, Arash Hariri
JMLR
2008
148views more  JMLR 2008»
13 years 8 months ago
Linear-Time Computation of Similarity Measures for Sequential Data
Efficient and expressive comparison of sequences is an essential procedure for learning with sequential data. In this article we propose a generic framework for computation of sim...
Konrad Rieck, Pavel Laskov
NAR
2008
119views more  NAR 2008»
13 years 8 months ago
Phospho.ELM: a database of phosphorylation sites - update 2008
Phospho.ELM is a manually curated database of eukaryotic phosphorylation sites. The resource includes data collected from published literature as well as high-throughput data sets...
Francesca Diella, Cathryn M. Gould, Claudia Chica,...
JCB
2002
111views more  JCB 2002»
13 years 8 months ago
A General Edit Distance between RNA Structures
Arc-annotated sequences are useful in representing the structural information of RNA sequences. In general, RNA secondary and tertiary structures can be represented as a set of ne...
Tao Jiang, Guohui Lin, Bin Ma, Kaizhong Zhang