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IPPS
2006
IEEE
14 years 3 months ago
MT-ClustalW: multithreading multiple sequence alignment
ClustalW is the most widely used tool for aligning multiple protein or nucleotide sequences. The alignment is achieved via three stages: pairwise alignment, guide tree generation ...
K. Chaichoompu, Surin Kittitornkun, Sissades Tongs...
IPPS
2002
IEEE
14 years 2 months ago
Massively Parallel Solutions for Molecular Sequence Analysis
In this paper we present new approaches to high performance protein database scanning on two novel massively parallel architectures to gain supercomputer power at low cost. The ï¬...
Bertil Schmidt, Heiko Schröder, Manfred Schim...
ECML
2006
Springer
14 years 22 days ago
Sequence Discrimination Using Phase-Type Distributions
Abstract We propose in this paper a novel approach to the classification of discrete sequences. This approach builds a model fitting some dynamical features deduced from the learni...
Jérôme Callut, Pierre Dupont
ISMB
1993
13 years 10 months ago
Probabilistic Structure Calculations: A Three-Dimensional tRNA Structure from Sequence Correlation Data
Algorithmsbasedonprobability theorycanaddressissues of uncertainty directly throughtheir representational frameworkandtheir theoryfor data combination.In this paper, wediscuss the...
Russ B. Altman
CEC
2005
IEEE
14 years 2 months ago
Evolving hidden Markov models for protein secondary structure prediction
New results are presented for the prediction of secondary structure information for protein sequences using Hidden Markov Models (HMMs) evolved using a Genetic Algorithm (GA). We a...
Kyoung-Jae Won, Thomas Hamelryck, Adam Prügel...