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EVOW
2009
Springer
14 years 2 months ago
A Memetic Algorithm for Phylogenetic Reconstruction with Maximum Parsimony
The Maximum Parsimony problem aims at reconstructing a phylogenetic tree from DNA, RNA or protein sequences while minimizing the number of evolutionary changes. Much work has been ...
Jean-Michel Richer, Adrien Goëffon, Jin-Kao H...
BIBM
2007
IEEE
162views Bioinformatics» more  BIBM 2007»
14 years 1 months ago
Multiple Interacting Subcellular Structure Tracking by Sequential Monte Carlo Method
With the wide application of green fluorescent protein (GFP) in the study of live cells, there is a surging need for the computer-aided analysis on the huge amount of image seque...
Quan Wen, Jean Gao, Kate Luby-Phelps
ISBRA
2007
Springer
14 years 1 months ago
Clustering Algorithms Optimizer: A Framework for Large Datasets
Clustering algorithms are employed in many bioinformatics tasks, including categorization of protein sequences and analysis of gene-expression data. Although these algorithms are r...
Roy Varshavsky, David Horn, Michal Linial
IPPS
2006
IEEE
14 years 1 months ago
Parallel implementation of a quartet-based algorithm for phylogenetic analysis
This paper describes a parallel implementation of our recently developed algorithm for phylogenetic analysis on the IBM BlueGene/L cluster [15]. This algorithm constructs evolutio...
Bing Bing Zhou, Daniel Chu, Monther Tarawneh, Ping...
DILS
2005
Springer
14 years 1 months ago
Hybrid Integration of Molecular-Biological Annotation Data
: We present a new approach to integrate annotation data from public sources for the expression analysis of genes and proteins. Expression data is materialized in a data warehouse ...
Toralf Kirsten, Hong Hai Do, Christine Körner...