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NAR
2007
124views more  NAR 2007»
13 years 9 months ago
EVEREST: a collection of evolutionary conserved protein domains
Protein domains are subunits of proteins that recur throughout the protein world. There are many definitions attempting to capture the essence of a protein domain, and several sys...
Elon Portugaly, Nathan Linial, Michal Linial
DATESO
2007
157views Database» more  DATESO 2007»
13 years 11 months ago
Index-Based Approach to Similarity Search in Protein and Nucleotide Databases
When searching databases of nucleotide or protein sequences, finding a local alignment of two sequences is one of the main tasks. Since the sizes of available databases grow const...
David Hoksza, Tomás Skopal
CANDC
2004
ACM
13 years 10 months ago
Identification of related gene/protein names based on an HMM of name variations
Gene and protein names follow few, if any, true naming conventions and are subject to great variation in different occurrences of the same name. This gives rise to two important p...
Lana Yeganova, Lawrence H. Smith, W. John Wilbur
BIBM
2010
IEEE
277views Bioinformatics» more  BIBM 2010»
13 years 8 months ago
Accurate prediction of ATP-binding residues using sequence and sequence-derived structural descriptors
ATP is a ubiquitous nucleotide that provides energy for cellular activities, catalyzes chemical reactions, and is involved in cellular signaling. The knowledge of the ATPprotein in...
Ke Chen 0003, Marcin J. Mizianty, Lukasz A. Kurgan
ISMB
2000
13 years 11 months ago
Integrative Analysis of Protein Interaction Data
We have developed a method for the integrative analysis of protein interaction data. It comprises clustering, visualization and data integration components. The method is generall...
Matthias Fellenberg, Kaj Albermann, Alfred Zollner...