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» Shotgun Sequence Assembly
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CIBCB
2007
IEEE
14 years 3 months ago
Multiple Sequence Alignment using Fuzzy Logic
—DNA matching is a crucial step in sequence alignment. Since sequence alignment is an approximate matching process there is a need for good approximate algorithms. The process of...
Sara Nasser, Gregory Vert, Monica N. Nicolescu, Al...
DEXA
2009
Springer
167views Database» more  DEXA 2009»
14 years 3 months ago
Alignment of Noisy and Uniformly Scaled Time Series
The alignment of noisy and uniformly scaled time series is an important but difficult task. Given two time series, one of which is a uniformly stretched subsequence of the other, w...
Constanze Lipowsky, Egor Dranischnikow, Herbert G&...
BMCBI
2006
110views more  BMCBI 2006»
13 years 8 months ago
preAssemble: a tool for automatic sequencer trace data processing
Background: Trace or chromatogram files (raw data) are produced by automatic nucleic acid sequencing equipment or sequencers. Each file contains information which can be interpret...
Alexei A. Adzhubei, Jon K. Laerdahl, Anna V. Vlaso...
WABI
2009
Springer
156views Bioinformatics» more  WABI 2009»
14 years 3 months ago
Phylogenetic Comparative Assembly
Recent high throughput sequencing technologies are capable of generating a huge amount of data for bacterial genome sequencing projects. Although current sequence assemblers succes...
Peter Husemann, Jens Stoye
ISMB
1996
13 years 10 months ago
Improving the Quality of Automatic DNA Sequence Assembly Using Fluorescent Trace-Data Classifications
Virtually all large-scale sequencing projects use automatic sequence-assembly programs to aid in the determination of DNA sequences. The computer-generated assemblies require subs...
Carolyn F. Allex, Schuyler F. Baldwin, Jude W. Sha...