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ICCABS
2011
13 years 10 days ago
CloG: A pipeline for closing gaps in a draft assembly using short reads
— Closing of gaps in draft assemblies using Next Generation Sequencing (NGS) data is becoming increasingly important. In this paper we present CloG, a software pipeline that uses...
Xing Yang, Daniel Medvin, Giri Narasimhan, Deborah...
BMCBI
2011
13 years 3 months ago
Assessing the benefits of using mate-pairs to resolve repeats in de novo short-read prokaryotic assemblies
Background: Next-generation sequencing technologies allow genomes to be sequenced more quickly and less expensively than ever before. However, as sequencing technology has improve...
Joshua Wetzel, Carl Kingsford, Mihai Pop
SCFBM
2008
91views more  SCFBM 2008»
13 years 8 months ago
Simple tools for assembling and searching high-density picolitre pyrophosphate sequence data
Background: The advent of pyrophosphate sequencing makes large volumes of sequencing data available at a lower cost than previously possible. However, the short read lengths are d...
Nicolas J. Parker, Andrew G. Parker
WADS
1997
Springer
89views Algorithms» more  WADS 1997»
14 years 22 days ago
Intractability of Assembly Sequencing: Unit Disks in the Plane
We consider the problem of removing a given disk from a collection of unit disks in the plane. At each step, we allow a disk to be removed by a collision-free translation to infin...
Michael H. Goldwasser, Rajeev Motwani
AI
2001
Springer
14 years 1 months ago
Constraint-Based Vehicle Assembly Line Sequencing
Michael E. Bergen, Peter van Beek, Tom Carchrae