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» Similarities of Ordered Gene Lists
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IDA
2005
Springer
14 years 4 months ago
Bayesian Networks Learning for Gene Expression Datasets
DNA arrays yield a global view of gene expression and can be used to build genetic networks models, in order to study relations between genes. Literature proposes Bayesian network ...
Giacomo Gamberoni, Evelina Lamma, Fabrizio Riguzzi...
BMCBI
2005
94views more  BMCBI 2005»
13 years 11 months ago
Measuring similarities between transcription factor binding sites
Background: Collections of transcription factor binding profiles (Transfac, Jaspar) are essential to identify regulatory elements in DNA sequences. Subsets of highly similar profi...
Szymon M. Kielbasa, Didier Gonze, Hanspeter Herzel
AI
2006
Springer
14 years 2 months ago
A New Profile Alignment Method for Clustering Gene Expression Data
We focus on clustering gene expression temporal profiles, and propose a novel, simple algorithm that is powerful enough to find an efficient distribution of genes over clusters. We...
Ataul Bari, Luis Rueda
BIODATAMINING
2008
96views more  BIODATAMINING 2008»
13 years 11 months ago
Fast approximate hierarchical clustering using similarity heuristics
Background: Agglomerative hierarchical clustering (AHC) is a common unsupervised data analysis technique used in several biological applications. Standard AHC methods require that...
Meelis Kull, Jaak Vilo
STOC
2009
ACM
187views Algorithms» more  STOC 2009»
14 years 11 months ago
Artin automorphisms, cyclotomic function fields, and folded list-decodable codes
Algebraic codes that achieve list decoding capacity were recently constructed by a careful "folding" of the Reed-Solomon code. The "low-degree" nature of this f...
Venkatesan Guruswami