DNA arrays yield a global view of gene expression and can be used to build genetic networks models, in order to study relations between genes. Literature proposes Bayesian network ...
Background: Collections of transcription factor binding profiles (Transfac, Jaspar) are essential to identify regulatory elements in DNA sequences. Subsets of highly similar profi...
Szymon M. Kielbasa, Didier Gonze, Hanspeter Herzel
We focus on clustering gene expression temporal profiles, and propose a novel, simple algorithm that is powerful enough to find an efficient distribution of genes over clusters. We...
Background: Agglomerative hierarchical clustering (AHC) is a common unsupervised data analysis technique used in several biological applications. Standard AHC methods require that...
Algebraic codes that achieve list decoding capacity were recently constructed by a careful "folding" of the Reed-Solomon code. The "low-degree" nature of this f...