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» Similarity Searching for Multi-Attribute Sequences
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KDD
2010
ACM
272views Data Mining» more  KDD 2010»
13 years 6 months ago
Scalable similarity search with optimized kernel hashing
Scalable similarity search is the core of many large scale learning or data mining applications. Recently, many research results demonstrate that one promising approach is creatin...
Junfeng He, Wei Liu, Shih-Fu Chang
BMCBI
2008
142views more  BMCBI 2008»
13 years 7 months ago
Optimal neighborhood indexing for protein similarity search
Background: Similarity inference, one of the main bioinformatics tasks, has to face an exponential growth of the biological data. A classical approach used to cope with this data ...
Pierre Peterlongo, Laurent Noé, Dominique L...
GECCO
2006
Springer
161views Optimization» more  GECCO 2006»
13 years 11 months ago
Instance similarity and the effectiveness of case injection in a genetic algorithm for binary quadratic programming
When an evolutionary algorithm addresses a sequence of instances of the same problem, it can seed its population with solutions that it found for previous instances. This techniqu...
Jason Amunrud, Bryant A. Julstrom
BMCBI
2005
123views more  BMCBI 2005»
13 years 7 months ago
PSI-BLAST-ISS: an intermediate sequence search tool for estimation of the position-specific alignment reliability
Background: Protein sequence alignments have become indispensable for virtually any evolutionary, structural or functional study involving proteins. Modern sequence search and com...
Mindaugas Margelevicius, Ceslovas Venclovas
IJCAI
2003
13 years 9 months ago
Comparing Best-First Search and Dynamic Programming for Optimal Multiple Sequence Alignment
Sequence alignment is an important problem in computational biology. We compare two different approaches to the problem of optimally aligning two or more character strings: bounde...
Heath Hohwald, Ignacio Thayer, Richard E. Korf