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» Similarity Searching for Multi-Attribute Sequences
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BMCBI
2010
131views more  BMCBI 2010»
13 years 7 months ago
FACT: Functional annotation transfer between proteins with similar feature architectures
Background: The increasing number of sequenced genomes provides the basis for exploring the genetic and functional diversity within the tree of life. Only a tiny fraction of the e...
Tina Koestler, Arndt von Haeseler, Ingo Ebersberge...
CIKM
2005
Springer
14 years 1 months ago
Exact match search in sequence data using suffix trees
We study suitable indexing techniques to support efficient exact match search in large biological sequence databases. We propose a suffix tree (ST) representation, called STA-DF, ...
Mihail Halachev, Nematollaah Shiri, Anand Thamildu...
DATESO
2010
169views Database» more  DATESO 2010»
13 years 5 months ago
Parametrised Hausdorff Distance as a Non-Metric Similarity Model for Tandem Mass Spectrometry
Abstract. Tandem mass spectrometry is a widely used method for protein and peptide sequences identification. Since the mass spectra contain up to 80% of noise and many other inaccu...
Jiri Novák, David Hoksza
WWW
2008
ACM
14 years 8 months ago
Web graph similarity for anomaly detection (poster)
Web graphs are approximate snapshots of the web, created by search engines. Their creation is an error-prone procedure that relies on the availability of Internet nodes and the fa...
Panagiotis Papadimitriou 0002, Ali Dasdan, Hector ...
ISMIR
2005
Springer
123views Music» more  ISMIR 2005»
14 years 1 months ago
Polyphonic Musical Sequence Alignment for Database Search
Finding the best matching database target to a melodic query has been of great interest in the music IR world. The string alignment paradigm works well for this task when comparin...
Bryan Pardo, Manan Sanghi