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» Similarity Searching for Multi-Attribute Sequences
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BMCBI
2004
150views more  BMCBI 2004»
13 years 7 months ago
SS-Wrapper: a package of wrapper applications for similarity searches on Linux clusters
Background: Large-scale sequence comparison is a powerful tool for biological inference in modern molecular biology. Comparing new sequences to those in annotated databases is a u...
Chunlin Wang, Elliot J. Lefkowitz
ASAP
2004
IEEE
124views Hardware» more  ASAP 2004»
13 years 11 months ago
Biosequence Similarity Search on the Mercury System
Biosequence similarity search is an important application in modern molecular biology. Search algorithms aim to identify sets of sequences whose extensional similarity suggests a c...
Praveen Krishnamurthy, Jeremy Buhler, Roger D. Cha...
ECCB
2005
IEEE
14 years 1 months ago
SIMAP - The similarity matrix of proteins
Similarity Matrix of Proteins (SIMAP) (http://mips.gsf. 10 de/simap) provides a database based on a precomputed similarity matrix covering the similarity space formed by .4 millio...
Roland Arnold, Thomas Rattei, Patrick Tischler, Mi...
ICIP
2003
IEEE
14 years 9 months ago
Fast similarity search on video signatures
Video signatures are compact representations of video sequences designed for efficient similarity measurement. In this paper, we propose a feature extraction technique to support ...
Sen-Ching S. Cheung, Avideh Zakhor
SAC
2003
ACM
14 years 22 days ago
Similar_Join: Extending DBMS with a Bio-specific Operator
Existing sequence comparison software applications lack automation, abstraction, performance, and flexibility. Users need a new way of studying and applying sequence comparisons i...
Jake Yue Chen, John V. Carlis