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» Similarity Searching for Multi-Attribute Sequences
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NAR
2000
123views more  NAR 2000»
13 years 7 months ago
The Protein Information Resource (PIR)
The Protein Information Resource (PIR) produces the largest, most comprehensive, annotated protein sequence database in the public domain, the PIRInternational Protein Sequence Da...
Winona C. Barker, John S. Garavelli, Hongzhan Huan...
WSDM
2012
ACM
207views Data Mining» more  WSDM 2012»
12 years 3 months ago
Sequence clustering and labeling for unsupervised query intent discovery
One popular form of semantic search observed in several modern search engines is to recognize query patterns that trigger instant answers or domain-specific search, producing sem...
Jackie Chi Kit Cheung, Xiao Li
DASFAA
2005
IEEE
136views Database» more  DASFAA 2005»
14 years 1 months ago
Indexing DNA Sequences Using q-Grams
We have observed in recent years a growing interest in similarity search on large collections of biological sequences. Contributing to the interest, this paper presents a method fo...
Xia Cao, Shuai Cheng Li, Anthony K. H. Tung
PODS
2005
ACM
127views Database» more  PODS 2005»
14 years 7 months ago
FTW: fast similarity search under the time warping distance
Time-series data naturally arise in countless domains, such as meteorology, astrophysics, geology, multimedia, and economics. Similarity search is very popular, and DTW (Dynamic T...
Yasushi Sakurai, Masatoshi Yoshikawa, Christos Fal...
JMLR
2012
11 years 10 months ago
Active Clustering of Biological Sequences
Given a point set S and an unknown metric d on S, we study the problem of efficiently partitioning S into k clusters while querying few distances between the points. In our model...
Konstantin Voevodski, Maria-Florina Balcan, Heiko ...