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CPM
2005
Springer
100views Combinatorics» more  CPM 2005»
13 years 9 months ago
Hardness of Optimal Spaced Seed Design
Abstract. Speeding up approximate pattern matching is a line of research in stringology since the 80’s. Practically fast approaches belong to the class of filtration algorithms,...
François Nicolas, Eric Rivals
CSR
2006
Springer
13 years 11 months ago
Fast Motif Search in Protein Sequence Databases
Regular expression pattern matching is widely used in computational biology. Searching through a database of sequences for a motif (a simple regular expression), or its variations...
Elena Zheleva, Abdullah N. Arslan
VLDB
2007
ACM
145views Database» more  VLDB 2007»
14 years 7 months ago
LCS-TRIM: Dynamic Programming Meets XML Indexing and Querying
In this article, we propose a new approach for querying and indexing a database of trees with specific applications to XML datasets. Our approach relies on representing both the q...
Shirish Tatikonda, Srinivasan Parthasarathy, Matth...
ICN
2005
Springer
14 years 1 months ago
Scheduling Algorithms for Input Queued Switches Using Local Search Technique
Input Queued switches have been very well studied in the recent past. The Maximum Weight Matching (MWM) algorithm is known to deliver 100% throughput under any admissible traffic. ...
Yanfeng Zheng, Simin He, Shutao Sun, Wen Gao
ICDM
2007
IEEE
99views Data Mining» more  ICDM 2007»
14 years 1 months ago
Optimizing Frequency Queries for Data Mining Applications
Data mining algorithms use various Trie and bitmap-based representations to optimize the support (i.e., frequency) counting performance. In this paper, we compare the memory requi...
Hassan H. Malik, John R. Kender