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» Simulated Annealing for Convex Optimization
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IPPS
2006
IEEE
14 years 3 months ago
Parallel multiple sequence alignment with local phylogeny search by simulated annealing
The problem of multiple sequence alignment is one of the most important problems in computational biology. In this paper we present a new method that simultaneously performs multi...
Jaroslaw Zola, Denis Trystram, Andrei Tchernykh, C...
BMCBI
2005
92views more  BMCBI 2005»
13 years 9 months ago
A restraint molecular dynamics and simulated annealing approach for protein homology modeling utilizing mean angles
Background: We have developed the program PERMOL for semi-automated homology modeling of proteins. It is based on restrained molecular dynamics using a simulated annealing protoco...
Andreas Möglich, Daniel Weinfurtner, Till Mau...
IPPS
2000
IEEE
14 years 2 months ago
A General Parallel Simulated Annealing Library and its Application in Airline Industry
To solve real-world discrete optimization problems approximately metaheuristics such as simulated annealing and other local search methods are commonly used. For large instances o...
Georg Kliewer, Stefan Tschöke
WSC
2004
13 years 11 months ago
Simulated Annealing for Selection of Experimental Regions in Response Surface Methodology Applications
In this paper we describe a methodology that includes the complementary use of simulated annealing and response surface methodology (RSM). The methodology was developed for analys...
Jeffrey B. Schamburg, Donald E. Brown
FOCI
2007
IEEE
14 years 4 months ago
Simulated Annealing with Opposite Neighbors
— This paper presents an improvement to the vanilla version of the simulated annealing algorithm by using opposite neighbors. This new technique, is based on the recently propose...
Mario Ventresca, Hamid R. Tizhoosh