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» Smoothed Analysis of Balancing Networks
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BMCBI
2008
117views more  BMCBI 2008»
13 years 7 months ago
Using a logical model to predict the growth of yeast
Background: A logical model of the known metabolic processes in S. cerevisiae was constructed from iFF708, an existing Flux Balance Analysis (FBA) model, and augmented with inform...
Ken E. Whelan, Ross D. King
BMCBI
2008
129views more  BMCBI 2008»
13 years 7 months ago
An analytic and systematic framework for estimating metabolic flux ratios from 13C tracer experiments
Background: Metabolic fluxes provide invaluable insight on the integrated response of a cell to environmental stimuli or genetic modifications. Current computational methods for e...
Ari Rantanen, Juho Rousu, Paula Jouhten, Nicola Za...
PODS
2005
ACM
211views Database» more  PODS 2005»
14 years 7 months ago
Join-distinct aggregate estimation over update streams
There is growing interest in algorithms for processing and querying continuous data streams (i.e., data that is seen only once in a fixed order) with limited memory resources. Pro...
Sumit Ganguly, Minos N. Garofalakis, Amit Kumar, R...
ISMB
2004
13 years 8 months ago
Predicting gene regulation by sigma factors in Bacillus subtilis from genome-wide data
Motivation: Sigma factors regulate the expression of genes in Bacillus subtilis at the transcriptional level. First we assess the ability of currently available gene regulatory ne...
Michiel J. L. de Hoon, Yuko Makita, Seiya Imoto, K...
WWW
2008
ACM
14 years 8 months ago
Exploring social annotations for information retrieval
Social annotation has gained increasing popularity in many Web-based applications, leading to an emerging research area in text analysis and information retrieval. This paper is c...
Ding Zhou, Jiang Bian, Shuyi Zheng, Hongyuan Zha, ...