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» Smoothing Gene Expression Using Biological Networks
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BIBE
2006
IEEE
123views Bioinformatics» more  BIBE 2006»
14 years 1 months ago
Isolation and Visualization of Codon Usage Biases
While genomic sequencing projects have proved an abundant source of information for biological studies ranging from the molecular to the ecological in scale, much of the informati...
Douglas W. Raiford, Dan E. Krane, Travis E. Doom, ...
SEMWEB
2009
Springer
14 years 2 months ago
Developing an Ontology from the Application Up
 The  biomedical  ontology  community  is  producing  ontologies  which   represent   biological   knowledge   and   with   a   bias   towards   a   realist   pe...
James Malone, Tomasz Adamusiak, Ele Holloway, Mish...
HYBRID
2001
Springer
14 years 3 days ago
Hybrid Modeling and Simulation of Biomolecular Networks
Abstract. In a biological cell, cellular functions and the genetic regulatory apparatus are implemented and controlled by a network of chemical reactions in which regulatory protei...
Rajeev Alur, Calin Belta, Franjo Ivancic
GECCO
2006
Springer
220views Optimization» more  GECCO 2006»
13 years 11 months ago
Comparing evolutionary algorithms on the problem of network inference
In this paper, we address the problem of finding gene regulatory networks from experimental DNA microarray data. We focus on the evaluation of the performance of different evoluti...
Christian Spieth, Rene Worzischek, Felix Streicher...
BIOINFORMATICS
2006
142views more  BIOINFORMATICS 2006»
13 years 7 months ago
Intervention in a family of Boolean networks
Motivation: Intervention in a gene regulatory network is used to avoid undesirable states, such as those associated with a disease. Several types of intervention have been studied...
Ashish Choudhary, Aniruddha Datta, Michael L. Bitt...