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» Smoothing Gene Expression Using Biological Networks
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BIOWIRE
2007
Springer
13 years 11 months ago
An Artificial Chemistry for Networking
Chemical computing models have been proposed since the 1980ies for expressing concurrent computations in elegant ways for shared memory systems. In this paper we look at the distri...
Thomas Meyer, Lidia Yamamoto, Christian F. Tschudi...
BMCBI
2008
128views more  BMCBI 2008»
13 years 7 months ago
Finding sequence motifs with Bayesian models incorporating positional information: an application to transcription factor bindin
Background: Biologically active sequence motifs often have positional preferences with respect to a genomic landmark. For example, many known transcription factor binding sites (T...
Nak-Kyeong Kim, Kannan Tharakaraman, Leonardo Mari...
BMCBI
2011
12 years 11 months ago
FFCA: a feasibility-based method for flux coupling analysis of metabolic networks
Background: Flux coupling analysis (FCA) is a useful method for finding dependencies between fluxes of a metabolic network at steady-state. FCA classifies reactions into subsets (...
László Dávid, Sayed-Amir Mara...
NAR
2006
100views more  NAR 2006»
13 years 7 months ago
StellaBase: The Nematostella vectensis Genomics Database
ted Talks and Poster Abstracts S1, T1 Title: Evolution of the Mammalian Lamin A Gene Author: Susan N. LoCurto and Dorothy E. Pumo Affiliation: Hofstra University, Department of Bio...
James C. Sullivan, Joseph F. Ryan, James A. Watson...
BMCBI
2010
134views more  BMCBI 2010»
13 years 7 months ago
ScreenMill: A freely available software suite for growth measurement, analysis and visualization of high-throughput screen data
Background: Many high-throughput genomic experiments, such as Synthetic Genetic Array and yeast two-hybrid, use colony growth on solid media as a screen metric. These experiments ...
John C. Dittmar, Robert J. D. Reid, Rodney Rothste...