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» Smoothing Gene Expression Using Biological Networks
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BMCBI
2004
185views more  BMCBI 2004»
13 years 8 months ago
Linear fuzzy gene network models obtained from microarray data by exhaustive search
Background: Recent technological advances in high-throughput data collection allow for experimental study of increasingly complex systems on the scale of the whole cellular genome...
Bahrad A. Sokhansanj, J. Patrick Fitch, Judy N. Qu...
BMCBI
2010
115views more  BMCBI 2010»
13 years 9 months ago
Multiconstrained gene clustering based on generalized projections
Background: Gene clustering for annotating gene functions is one of the fundamental issues in bioinformatics. The best clustering solution is often regularized by multiple constra...
Jia Zeng, Shanfeng Zhu, Alan Wee-Chung Liew, Hong ...
WASA
2009
Springer
189views Algorithms» more  WASA 2009»
14 years 3 months ago
Information Extraction as Link Prediction: Using Curated Citation Networks to Improve Gene Detection
Abstract. In this paper we explore the usefulness of various types of publicationrelated metadata, such as citation networks and curated databases, for the task of identifying gene...
Andrew Arnold, William W. Cohen
ACMSE
2005
ACM
14 years 2 months ago
Heuristics for dependency conjectures in proteomic signaling pathways
A key issue in the study of protein signaling networks is understanding the relationships among proteins in the network. Understanding these relationships in the context of a netw...
Edward E. Allen, Jacquelyn S. Fetrow, David J. Joh...
RECOMB
2002
Springer
14 years 9 months ago
A bayesian approach to transcript estimation from gene array data: the BEAM technique
We present a new statistically optimal approach to estimate transcript levels and ratios from one or more gene array experiments. The Bayesian Estimation of Array Measurements (BE...
Ron O. Dror, Jonathan G. Murnick, Nicola A. Rinald...