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» Smoothing Gene Expression Using Biological Networks
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BMCBI
2006
118views more  BMCBI 2006»
13 years 9 months ago
Low degree metabolites explain essential reactions and enhance modularity in biological networks
Background: Recently there has been a lot of interest in identifying modules at the level of genetic and metabolic networks of organisms, as well as in identifying single genes an...
Areejit Samal, Shalini Singh, Varun Giri, Sandeep ...
ANSS
2007
IEEE
14 years 3 months ago
Evaluating the Design of Biological Cells Using a Computer Workbench
For embedded systems as well as for biological cell systems, design is a feature that defines their identity. The assembly of different components in designs of both systems can ...
Tessa E. Pronk, Simon Polstra, Andy D. Pimentel, T...
ICASSP
2010
IEEE
13 years 9 months ago
Structuring a gene network using a multiresolution independence test
In order to structure a gene network, a score-based approach is often used. A score-based approach, however, is problematic because by assuming a probability distribution, one is ...
Takayuki Yamamoto, Tetsuya Takiguchi, Yasuo Ariki
BIOINFORMATICS
2006
118views more  BIOINFORMATICS 2006»
13 years 9 months ago
A probabilistic dynamical model for quantitative inference of the regulatory mechanism of transcription
Motivation Quantitative estimation of the regulatory relationship between transcription factors and genes is a fundamental stepping stone when trying to develop models of cellular...
Guido Sanguinetti, Magnus Rattray, Neil D. Lawrenc...
CORR
2007
Springer
110views Education» more  CORR 2007»
13 years 9 months ago
Computer algebra in systems biology
Systems biology focuses on the study of entire biological systems rather than on their individual components. With the emergence of high-throughput data generation technologies for...
Reinhard C. Laubenbacher, Bernd Sturmfels