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IWPC
2005
IEEE
14 years 2 months ago
JRipples: A Tool for Program Comprehension during Incremental Change
Incremental software change adds new functionality to software. It is the foundation of software evolution, maintenance, iterative development, agile development, and other softwa...
Jonathan Buckner, Joseph Buchta, Maksym Petrenko, ...
WOSP
2000
ACM
14 years 1 months ago
How system architectures impede interoperability
Interoperability problems arise when complex software systems are constructed by integrating distinct, and often heterogeneous, components. By performing interoperability analysis...
Leigh A. Davis, Jamie Payton, Rose F. Gamble
CSMR
2003
IEEE
14 years 2 months ago
Improving Dynamic Data Analysis with Aspect-Oriented Programming
In this paper we present a new instrumentation approach to reverse engineer a given software application. Our approach is based on aspect-oriented programming and provides support...
Thomas Gschwind, Johann Oberleitner
BMCBI
2011
13 years 18 days ago
Combinatorial analysis and algorithms for quasispecies reconstruction using next-generation sequencing
Background: Next-generation sequencing (NGS) offers a unique opportunity for high-throughput genomics and has potential to replace Sanger sequencing in many fields, including de-n...
Mattia C. F. Prosperi, Luciano Prosperi, Alessandr...
BMCBI
2011
13 years 18 days ago
Proteinortho: Detection of (Co-)Orthologs in Large-Scale Analysis
Background: Orthology analysis is an important part of data analysis in many areas of bioinformatics such as comparative genomics and molecular phylogenetics. The ever-increasing ...
Marcus Lechner, Sven Findeiß, Lydia Steiner,...