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» Solutions to Computational Problems Through Gene Assembly
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APCSAC
2006
IEEE
14 years 1 months ago
Reliable Systolic Computing Through Redundancy
The systolic array paradigm has low communication demand because it does not use costly global communication and each processor communicates with few other processors. It is thus s...
Kunio Okuda, Siang Wun Song, Marcos Tatsuo Yamamot...
BMCBI
2008
125views more  BMCBI 2008»
13 years 7 months ago
SynteBase/SynteView: a tool to visualize gene order conservation in prokaryotic genomes
Background: It has been repeatedly observed that gene order is rapidly lost in prokaryotic genomes. However, persistent synteny blocks are found when comparing more or less distan...
Frédéric Lemoine, Bernard Labedan, O...
UC
2005
Springer
14 years 1 months ago
A Computational Model for Self-assembling Flexible Tiles
We present a theoretical model for self-assembling tiles with flexible branches motivated by DNA branched junction molecules. We encode an instance of a “problem” as a pot of ...
Natasa Jonoska, Gregory L. McColm
RECOMB
2008
Springer
14 years 8 months ago
Integrating Sequence and Topology for Efficient and Accurate Detection of Horizontal Gene Transfer
Abstract. One phylogeny-based approach to horizontal gene transfer (HGT) detection entails comparing the topology of a gene tree to that of the species tree, and using their differ...
Cuong Than, Guohua Jin, Luay Nakhleh
GECCO
2006
Springer
158views Optimization» more  GECCO 2006»
13 years 11 months ago
Exploring network topology evolution through evolutionary computations
We present an evolutionary methodology that explores the evolution of network topology when a uniform growth of the network traffic is considered. The network redesign problem is ...
Sami J. Habib, Alice C. Parker