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» Solutions to Computational Problems Through Gene Assembly
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EUROPAR
2003
Springer
14 years 26 days ago
Obtaining Hardware Performance Metrics for the BlueGene/L Supercomputer
Hardware performance monitoring is the basis of modern performance analysis tools for application optimization. We are interested in providing such performance analysis tools for t...
Pedro Mindlin, José R. Brunheroto, Luiz De ...
CDB
2004
Springer
172views Database» more  CDB 2004»
14 years 1 months ago
Constraint Database Solutions to the Genome Map Assembly Problem
Abstract. Long DNA sequences have to be cut using restriction enzymes into small fragments whose lengths and/or nucleotide sequences can be analyzed by currently available technolo...
Viswanathan Ramanathan, Peter Z. Revesz
BIRTHDAY
2004
Springer
14 years 1 months ago
Formal Properties of Gene Assembly: Equivalence Problem for Overlap Graphs
del based on (overlap) graphs. The latter is more abstract because the translation of legal strings into overlap graphs is not injective. In this paper we consider and solve the ov...
Tero Harju, Ion Petre, Grzegorz Rozenberg
DAM
2008
75views more  DAM 2008»
13 years 7 months ago
Patterns of simple gene assembly in ciliates
The intramolecular model for gene assembly in ciliates considers three operations, ld, hi, and dlad that can assemble any gene pattern through folding and recombination: the molec...
Tero Harju, Ion Petre, Vladimir Rogojin, Grzegorz ...
FCT
2007
Springer
14 years 1 months ago
A String-Based Model for Simple Gene Assembly
Abstract. The simple intramolecular model for gene assembly in ciliates is particularly interesting because it can predict the correct assembly of all available experimental data, ...
Robert Brijder, Miika Langille, Ion Petre