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CSB
2004
IEEE
208views Bioinformatics» more  CSB 2004»
13 years 11 months ago
Pair Stochastic Tree Adjoining Grammars for Aligning and Predicting Pseudoknot RNA Structures
Motivation: Since the whole genome sequences for many species are currently available, computational predictions of RNA secondary structures and computational identifications of t...
Hiroshi Matsui, Kengo Sato, Yasubumi Sakakibara
BMCBI
2011
13 years 2 months ago
Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
Background: The prediction of the structure of large RNAs remains a particular challenge in bioinformatics, due to the computational complexity and low levels of accuracy of state...
Zsuzsanna Sukosd, Bjarne Knudsen, Morten Vaerum, J...
RECOMB
2005
Springer
14 years 7 months ago
Segmentation Conditional Random Fields (SCRFs): A New Approach for Protein Fold Recognition
Abstract. Protein fold recognition is an important step towards understanding protein three-dimensional structures and their functions. A conditional graphical model, i.e. segmenta...
Yan Liu, Jaime G. Carbonell, Peter Weigele, Vanath...
SIGMETRICS
2005
ACM
127views Hardware» more  SIGMETRICS 2005»
14 years 1 months ago
A data streaming algorithm for estimating subpopulation flow size distribution
Statistical information about the flow sizes in the traffic passing through a network link helps a network operator to characterize network resource usage, infer traffic demands,...
Abhishek Kumar, Minho Sung, Jun Xu, Ellen W. Zegur...
SIGMOD
2012
ACM
288views Database» more  SIGMOD 2012»
11 years 10 months ago
Exploiting MapReduce-based similarity joins
Cloud enabled systems have become a crucial component to efficiently process and analyze massive amounts of data. One of the key data processing and analysis operations is the Sim...
Yasin N. Silva, Jason M. Reed