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RECOMB
2010
Springer
13 years 6 months ago
The Problem of Chromosome Reincorporation in DCJ Sorting and Halving
We study two problems in the double cut and join (DCJ) model: sorting – transforming one multilinear genome into another and halving – transforming a duplicated genome into a p...
Jakub Kovác, Marília D. V. Braga, Je...
SPAA
1995
ACM
13 years 11 months ago
Parallel Sorting with Limited Bandwidth
We study the problem of sorting on a parallel computer with limited communication bandwidth. By using the PRAM(m) model, where p processors communicate through a globally shared me...
Micah Adler, John W. Byers, Richard M. Karp
CPM
2009
Springer
189views Combinatorics» more  CPM 2009»
14 years 2 months ago
Average-Case Analysis of Perfect Sorting by Reversals
A sequence of reversals that takes a signed permutation to the identity is perfect if it preserves all common intervals between the permutation and the identity. The problem of com...
Mathilde Bouvel, Cedric Chauve, Marni Mishna, Domi...
ASIACRYPT
2004
Springer
14 years 28 days ago
Sieving Using Bucket Sort
This paper proposes a new sieving algorithm that employs a bucket sort as a part of a factoring algorithm such as the number field sieve. The sieving step requires an enormous num...
Kazumaro Aoki, Hiroki Ueda
DAM
2007
120views more  DAM 2007»
13 years 7 months ago
Advances on sorting by reversals
Theproblemofsortingsignedpermutationsbyreversalsisinspiredbygenomerearrangementproblemsincomputationalmolecular biology. Given two genomes represented as signed permutations of th...
Eric Tannier, Anne Bergeron, Marie-France Sagot