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RECOMB
2005
Springer
14 years 7 months ago
On Sorting by Translocations
The study of genome rearrangements is an important tool in comparative genomics. This paper revisits the problem of sorting a multichromosomal genome by translocations, i.e. exchan...
Anne Bergeron, Julia Mixtacki, Jens Stoye
CORR
2012
Springer
220views Education» more  CORR 2012»
12 years 3 months ago
A Bijective String Sorting Transform
Given a string of characters, the Burrows-Wheeler Transform rearranges the characters in it so as to produce another string of the same length which is more amenable to compressio...
Joseph Yossi Gil, David Allen Scott
FOSSACS
2004
Springer
14 years 25 days ago
Soft lambda-Calculus: A Language for Polynomial Time Computation
Soft linear logic ([Lafont02]) is a subsystem of linear logic characterizing the class PTIME. We introduce Soft lambda-calculus as a calculus typable in the intuitionistic and affi...
Patrick Baillot, Virgile Mogbil
VLDB
2007
ACM
117views Database» more  VLDB 2007»
14 years 7 months ago
RadixZip: Linear-Time Compression of Token Streams
RadixZip is a block compression technique for token streams. It introduces RadixZip Transform, a linear time algorithm that rearranges bytes using a technique inspired by radix so...
Binh Vo, Gurmeet Singh Manku
CPM
2009
Springer
131views Combinatorics» more  CPM 2009»
13 years 11 months ago
Linear Time Suffix Array Construction Using D-Critical Substrings
In this paper we present in detail a new efficient linear time and space suffix array construction algorithm(SACA), called the D-CriticalSubstring algorithm. The algorithm is built...
Ge Nong, Sen Zhang, Wai Hong Chan