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RECOMB
1997
Springer
13 years 11 months ago
A branch-and-cut algorithm for multiple sequence alignment
Multiple sequence alignment is an important problem in computational biology. We study the Maximum Trace formulation introduced by Kececioglu [?]. We first phrase the problem in ...
Knut Reinert, Hans-Peter Lenhof, Petra Mutzel, Kur...
ANCS
2007
ACM
13 years 11 months ago
An improved algorithm to accelerate regular expression evaluation
Modern network intrusion detection systems need to perform regular expression matching at line rate in order to detect the occurrence of critical patterns in packet payloads. Whil...
Michela Becchi, Patrick Crowley
ASPLOS
2009
ACM
13 years 11 months ago
Accelerating phase unwrapping and affine transformations for optical quadrature microscopy using CUDA
Optical Quadrature Microscopy (OQM) is a process which uses phase data to capture information about the sample being studied. OQM is part of an imaging framework developed by the ...
Perhaad Mistry, Sherman Braganza, David R. Kaeli, ...
CCS
2007
ACM
13 years 11 months ago
Analyzing network traffic to detect self-decrypting exploit code
Remotely-launched software exploits are a common way for attackers to intrude into vulnerable computer systems. As detection techniques improve, remote exploitation techniques are...
Qinghua Zhang, Douglas S. Reeves, Peng Ning, S. Pu...
GCB
2009
Springer
154views Biometrics» more  GCB 2009»
13 years 11 months ago
Comparative Identification of Differential Interactions from Trajectories of Dynamic Biological Networks
Abstract: It is often challenging to reconstruct accurately a complete dynamic biological network due to the scarcity of data collected in cost-effective experiments. This paper ad...
Zhengyu Ouyang, Mingzhou Song