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» Source Coding Scheme for Multiple Sequence Alignments
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GECCO
2003
Springer
128views Optimization» more  GECCO 2003»
14 years 3 months ago
Evolving Consensus Sequence for Multiple Sequence Alignment with a Genetic Algorithm
In this paper we present an approach that evolves the consensus sequence [25] for multiple sequence alignment (MSA) with genetic algorithm (GA). We have developed an encoding schem...
Conrad Shyu, James A. Foster
CIKM
2009
Springer
14 years 4 months ago
Linear predictive coding representation of correlated mutation for protein sequence alignment
Background: Although both conservation and correlated mutation (CM) are important information reflecting the different sorts of context in multiple sequence alignment, most of ali...
Chan-seok Jeong, Dongsup Kim
ICC
1997
IEEE
162views Communications» more  ICC 1997»
14 years 2 months ago
Combined Source-Channel Coding for the Transmission of Still Images over a Code Division Multiple Access (CDMA) Channel
— This letter considers a combined source-channel coding scheme for image transmission over the uplink of a wireless IS-95 code division multiple access (CDMA) channel using disc...
E. V. H. Iun, Amir K. Khandani
BMCBI
2008
122views more  BMCBI 2008»
13 years 10 months ago
Grammar-based distance in progressive multiple sequence alignment
Background: We propose a multiple sequence alignment (MSA) algorithm and compare the alignment-quality and execution-time of the proposed algorithm with that of existing algorithm...
David J. Russell, Hasan H. Otu, Khalid Sayood
STOC
2000
ACM
156views Algorithms» more  STOC 2000»
14 years 2 months ago
Near optimal multiple alignment within a band in polynomial time
Multiple sequence alignment is a fundamental problem in computational biology. Because of its notorious difficulties, aligning sequences within a constant band (c-diagonal) is a ...
Ming Li, Bin Ma, Lusheng Wang