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    » Spatio-Temporal Alignment of Sequences
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    CP
    2003
    Springer
    182views Artificial Intelligence» more  CP 2003»
    A SAT-Based Approach to Multiple Sequence Alignment
    14 years 28 days ago
    A SAT-Based Approach to Multiple Sequence Alignment
    Download  4c.ucc.ie
    Multiple sequence alignment is a central problem in Bioinformatics. A known integer programming approach is to apply branch-and-cut to exponentially large graph-theoretic models. T...
    Steven David Prestwich, Desmond G. Higgins, Orla O...
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    BIBE
    2005
    IEEE
    124views Bioinformatics» more  BIBE 2005»
    Approximate Global Alignment of Sequences
    14 years 1 months ago
    Approximate Global Alignment of Sequences
    Download  www.ideal.ece.ufl.edu
    We propose two novel dynamic programming (DP) methods that solve the the approximate bounded and unbounded global alignment problems for biological sequences. Our first method so...
    Tamer Kahveci, Venkatakrishnan Ramaswamy, Han Tao,...
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    CSB
    2005
    IEEE
    167views Bioinformatics» more  CSB 2005»
    SinicView: An Interactive Visualization Tool for Comparison of Multiple Sequence Alignment Results
    14 years 1 months ago
    SinicView: An Interactive Visualization Tool for Comparison of Multiple Sequence Alignment Results
    Download  cg1.iis.sinica.edu.tw
    In the initial stage of sequence analysis, a biologist is first faced with the questions about how to choose the best tool to align sequences of interest and how to analyze and v...
    Arthur Chun-Chieh Shih, D. T. Lee, Laurent Lin, Ch...
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    BMCBI
    2004
    177views more  BMCBI 2004»
    Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov model
    13 years 7 months ago
    Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov model
    Download  www.biomedcentral.com
    Background: Certain protein families are highly conserved across distantly related organisms and belong to large and functionally diverse superfamilies. The patterns of conservati...
    Andrew F. Neuwald, Jun S. Liu
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    TKDE
    2002
    103views more  TKDE 2002»
    Indexing and Retrieval for Genomic Databases
    13 years 7 months ago
    Indexing and Retrieval for Genomic Databases
    Download  www.cpe.ku.ac.th
    Hugh E. Williams, Justin Zobel
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