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» Spatio-Temporal Alignment of Sequences
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CSB
2003
IEEE
14 years 1 months ago
Genomic Sequence Analysis Using Gap Sequences and Pattern Filtering
A new pattern filtering technique is developed to analyze the genomic sequence in this research based on gap sequences, in which the distance of the same symbol is recorded consec...
Shih-Chieh Su, Chia H. Yeh, C. C. Jay Kuo
BMCBI
2010
104views more  BMCBI 2010»
13 years 7 months ago
Parameters for accurate genome alignment
Background: Genome sequence alignments form the basis of much research. Genome alignment depends on various mundane but critical choices, such as how to mask repeats and which sco...
Martin C. Frith, Michiaki Hamada, Paul Horton
CSB
2005
IEEE
130views Bioinformatics» more  CSB 2005»
14 years 1 months ago
TreeRefiner: A Tool for Refining a Multiple Alignment on a Phylogenetic Tree
We present TreeRefiner, a tool for refining multiple alignments of biological sequences. Given a multiple alignment, a phylogenetic tree, and scoring parameters as input, TreeRefi...
Aswath Manohar, Serafim Batzoglou
NAACL
2010
13 years 5 months ago
Prenominal Modifier Ordering via Multiple Sequence Alignment
Producing a fluent ordering for a set of prenominal modifiers in a noun phrase (NP) is a problematic task for natural language generation and machine translation systems. We prese...
Aaron Dunlop, Margaret Mitchell, Brian Roark
BIBM
2007
IEEE
132views Bioinformatics» more  BIBM 2007»
14 years 2 months ago
A Divide-and-Conquer Implementation of Three Sequence Alignment and Ancestor Inference
In this paper, we present an algorithm to simultaneously align three biological sequences with affine gap model and infer their common ancestral sequence. Our algorithm can be fu...
Feng Yue, Jijun Tang