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» Spatio-Temporal Alignment of Sequences
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SIGMOD
2011
ACM
150views Database» more  SIGMOD 2011»
12 years 11 months ago
WHAM: a high-throughput sequence alignment method
Over the last decade the cost of producing genomic sequences has dropped dramatically due to the current so called “next-gen” sequencing methods. However, these next-gen seque...
Yinan Li, Allison Terrell, Jignesh M. Patel
ICNSC
2008
IEEE
14 years 3 months ago
Multiple Sequence Alignment Based on Genetic Algorithms with Reserve Selection
— This paper presents an approach to the multiple sequence alignment (MSA) problem by applying genetic algorithms with a reserve selection mechanism. MSA is one of the most funda...
Yang Chen, Jinglu Hu, Kotaro Hirasawa, Songnian Yu
ASWEC
2008
IEEE
13 years 11 months ago
Root Cause Analysis Using Sequence Alignment and Latent Semantic Indexing
Automatic identification of software faults has enormous practical significance. This requires characterizing program execution behavior. Equally important is the aspect of diagno...
R. P. Jagadeesh Chandra Bose, U. Suresh
BMCBI
2004
96views more  BMCBI 2004»
13 years 8 months ago
Identification of regions in multiple sequence alignments thermodynamically suitable for targeting by consensus oligonucleotides
Background: Computer programs for the generation of multiple sequence alignments such as "Clustal W" allow detection of regions that are most conserved among many sequen...
Olga V. Matveeva, Brian T. Foley, Vladimir A. Nemt...
BMCBI
2006
111views more  BMCBI 2006»
13 years 9 months ago
Tools for integrated sequence-structure analysis with UCSF Chimera
Background: Comparing related structures and viewing the structures in the context of sequence alignments are important tasks in protein structure-function research. While many pr...
Elaine C. Meng, Eric F. Pettersen, Gregory S. Couc...