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» Spatio-Temporal Alignment of Sequences
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RECOMB
1997
Springer
14 years 1 months ago
A branch-and-cut algorithm for multiple sequence alignment
Multiple sequence alignment is an important problem in computational biology. We study the Maximum Trace formulation introduced by Kececioglu [?]. We first phrase the problem in ...
Knut Reinert, Hans-Peter Lenhof, Petra Mutzel, Kur...
IPPS
2009
IEEE
14 years 3 months ago
Parallel reconstruction of neighbor-joining trees for large multiple sequence alignments using CUDA
Computing large multiple protein sequence alignments using progressive alignment tools such as ClustalW requires several hours on state-of-the-art workstations. ClustalW uses a th...
Yongchao Liu, Bertil Schmidt, Douglas L. Maskell
IPPS
2006
IEEE
14 years 3 months ago
Multiple sequence alignment by quantum genetic algorithm
In this paper we describe a new approach for the well known problem in bioinformatics: Multiple Sequence Alignment (MSA). MSA is fundamental task as it represents an essential pla...
L. Abdesslem, M. Soham, B. Mohamed
ECIR
2010
Springer
13 years 10 months ago
BASIL: Effective Near-Duplicate Image Detection Using Gene Sequence Alignment
Abstract. Finding near-duplicate images is a task often found in Multimedia Information Retrieval (MIR). Toward this effort, we propose a novel idea by bridging two seemingly unrel...
Hung-sik Kim, Hau-Wen Chang, Jeongkyu Lee, Dongwon...
EMNLP
2007
13 years 10 months ago
A Sequence Alignment Model Based on the Averaged Perceptron
We describe a discriminatively trained sequence alignment model based on the averaged perceptron. In common with other approaches to sequence modeling using perceptrons, and in co...
Dayne Freitag, Shahram Khadivi