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» Spatio-Temporal Alignment of Sequences
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CPM
2004
Springer
156views Combinatorics» more  CPM 2004»
14 years 2 months ago
A Computational Model for RNA Multiple Structural Alignment.
Abstract. This paper addresses the problem of aligning multiple sequences of non-coding RNA genes. We approach this problem with the biologically motivated paradigm that scoring of...
Eugene Davydov, Serafim Batzoglou
RECOMB
2010
Springer
14 years 4 months ago
Alignment-Free Phylogenetic Reconstruction
We introduce the first polynomial-time phylogenetic reconstruction algorithm under a model of sequence evolution allowing insertions and deletions—or indels. Given appropriate ...
Constantinos Daskalakis, Sébastien Roch
ISMB
1996
13 years 10 months ago
Compact Encoding Strategies for DNA Sequence Similarity Search
Determining whether two DNA sequences are similar is an essential component of DNA sequence analysis. Dynamic programming is the algorithm of choice if computational time is not t...
David J. States, Pankaj Agarwal
NAR
1998
104views more  NAR 1998»
13 years 8 months ago
Database on the structure of large ribosomal subunit RNA
Our database on large ribosomal subunit RNA contained 334 sequences in July, 1995. All sequences in the database are aligned, taking into account secondary structure. The aligned ...
Peter De Rijk, An Caers, Yves Van de Peer, Rupert ...
ACL
2010
13 years 7 months ago
Learning Script Knowledge with Web Experiments
We describe a novel approach to unsupervised learning of the events that make up a script, along with constraints on their temporal ordering. We collect naturallanguage descriptio...
Michaela Regneri, Alexander Koller, Manfred Pinkal