1112 search results - page 91 / 223 » Spatio-Temporal Alignment of Sequences |
BMCBI
2005
13 years 9 months ago
2005
Background: Pairwise stochastic context-free grammars (Pair SCFGs) are powerful tools for evolutionary analysis of RNA, including simultaneous RNA sequence alignment and secondary...
BIOCOMP
2008
13 years 10 months ago
2008
Research in bioinformatics and computational biology relies heavily on algorithms that facilitate the understanding of biological processes through the application of statistical ...
IPPS
2008
IEEE
14 years 3 months ago
2008
IEEE
This paper presents a seed-based algorithm for intensive DNA sequence comparison. The novelty comes from the way seeds are used to efficiently generate small ungapped alignments ...
NAR
2007
13 years 8 months ago
2007
COMPASS is a method for homology detection and local alignment construction based on the comparison of multiple sequence alignments (MSAs). The method derives numerical profiles f...
ICML
2007
IEEE
14 years 10 months ago
2007
IEEE
Structural alignments are the most widely used tools for comparing proteins with low sequence similarity. The main contribution of this paper is to derive various kernels on prote...