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BMCBI
2008
89views more  BMCBI 2008»
13 years 7 months ago
R/parallel - speeding up bioinformatics analysis with R
Background: R is the preferred tool for statistical analysis of many bioinformaticians due in part to the increasing number of freely available analytical methods. Such methods ca...
Gonzalo Vera, Ritsert C. Jansen, Remo Suppi
WWW
2007
ACM
14 years 8 months ago
Speeding up adaptation of web service compositions using expiration times
Web processes must often operate in volatile environments where the quality of service parameters of the participating service providers change during the life time of the process...
John Harney, Prashant Doshi
FUN
2010
Springer
312views Algorithms» more  FUN 2010»
14 years 8 days ago
On Table Arrangements, Scrabble Freaks, and Jumbled Pattern Matching
Given a string s, the Parikh vector of s, denoted p(s), counts the multiplicity of each character in s. Searching for a match of Parikh vector q (a “jumbled string”) in the tex...
Peter Burcsi, Ferdinando Cicalese, Gabriele Fici, ...
CSB
2004
IEEE
177views Bioinformatics» more  CSB 2004»
13 years 11 months ago
Compressed Pattern Matching in DNA Sequences
We propose derivative Boyer-Moore (d-BM), a new compressed pattern matching algorithm in DNA sequences. This algorithm is based on the BoyerMoore method, which is one of the most ...
Lei Chen, Shiyong Lu, Jeffrey L. Ram
BMCBI
2008
77views more  BMCBI 2008»
13 years 7 months ago
SeqAn An efficient, generic C++ library for sequence analysis
Background: The use of novel algorithmic techniques is pivotal to many important problems in life science. For example the sequencing of the human genome [1] would not have been p...
Andreas Döring, David Weese, Tobias Rausch, K...