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» Statistical Analysis of Bayes Optimal Subset Ranking
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BMCBI
2004
177views more  BMCBI 2004»
13 years 8 months ago
Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov model
Background: Certain protein families are highly conserved across distantly related organisms and belong to large and functionally diverse superfamilies. The patterns of conservati...
Andrew F. Neuwald, Jun S. Liu
ISMB
2000
13 years 10 months ago
Analysis of Gene Expression Microarrays for Phenotype Classification
Several microarray technologies that monitor the level of expression of a large number of genes have recently emerged. Given DNA-microarray data for a set of cells characterized b...
Andrea Califano, Gustavo Stolovitzky, Yuhai Tu
PKDD
2009
Springer
120views Data Mining» more  PKDD 2009»
14 years 3 months ago
Variational Graph Embedding for Globally and Locally Consistent Feature Extraction
Existing feature extraction methods explore either global statistical or local geometric information underlying the data. In this paper, we propose a general framework to learn fea...
Shuang-Hong Yang, Hongyuan Zha, Shaohua Kevin Zhou...
CSB
2002
IEEE
169views Bioinformatics» more  CSB 2002»
14 years 1 months ago
Bayesian Network and Nonparametric Heteroscedastic Regression for Nonlinear Modeling of Genetic Network
We propose a new statistical method for constructing a genetic network from microarray gene expression data by using a Bayesian network. An essential point of Bayesian network con...
Seiya Imoto, SunYong Kim, Takao Goto, Sachiyo Abur...
CORR
2008
Springer
92views Education» more  CORR 2008»
13 years 9 months ago
Catching Up Faster by Switching Sooner: A Prequential Solution to the AIC-BIC Dilemma
Bayesian model averaging, model selection and its approximations such as BIC are generally statistically consistent, but sometimes achieve slower rates of convergence than other m...
Tim van Erven, Peter Grünwald, Steven de Rooi...