We consider a data-structural problem motivated by version control of a hierarchical directory structure in a system like Subversion. The model is that directories and files can b...
Background: Recent genomic scale survey of epigenetic states in the mammalian genomes has shown that promoters and enhancers are correlated with distinct chromatin signatures, pro...
Kyoung-Jae Won, Iouri Chepelev, Bing Ren, Wei Wang
Background: The detection of conserved motifs in promoters of orthologous genes (phylogenetic footprints) has become a common strategy to predict cis-acting regulatory elements. S...
1 The netCDF Operator (NCO) software facilitates manipulation and analysis of gridded2 geoscience data stored in the self-describing netCDF format. NCO is optimized to efficiently3...
We combine mixed integer linear programming (MILP) and constraint programming (CP) to minimize tardiness in planning and scheduling. Tasks are allocated to facilities using MILP an...