Sciweavers

123 search results - page 7 / 25
» Statistics of large scale sequence searching
Sort
View
BIOCOMP
2006
13 years 9 months ago
Filtering Tandem Repeats in DNA Sequences
A tandem repeat is a sequence of two or more contiguous, approximate copies of a pattern. Tandem repeats occur in the genomes of both eukaryotic and prokaryotic organisms. They ar...
Dina Sokol, Justin Tojeira
BMCBI
2004
150views more  BMCBI 2004»
13 years 7 months ago
SS-Wrapper: a package of wrapper applications for similarity searches on Linux clusters
Background: Large-scale sequence comparison is a powerful tool for biological inference in modern molecular biology. Comparing new sequences to those in annotated databases is a u...
Chunlin Wang, Elliot J. Lefkowitz
KDD
2010
ACM
272views Data Mining» more  KDD 2010»
13 years 6 months ago
Scalable similarity search with optimized kernel hashing
Scalable similarity search is the core of many large scale learning or data mining applications. Recently, many research results demonstrate that one promising approach is creatin...
Junfeng He, Wei Liu, Shih-Fu Chang
GECCO
2009
Springer
153views Optimization» more  GECCO 2009»
14 years 2 months ago
A search space analysis for the waste collection vehicle routing problem with time windows
We address a large scale waste collection vehicle routing problem with time windows (VRPTW) complicated by multiple disposal trips and drivers lunch breaks. A fitness search spac...
Andrew Runka, Beatrice M. Ombuki-Berman, Mario Ven...
BMCBI
2010
124views more  BMCBI 2010»
13 years 7 months ago
Estimation and efficient computation of the true probability of recurrence of short linear protein sequence motifs in unrelated
Background: Large datasets of protein interactions provide a rich resource for the discovery of Short Linear Motifs (SLiMs) that recur in unrelated proteins. However, existing met...
Norman E. Davey, Richard J. Edwards, Denis C. Shie...