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» Stochastic approaches for modelling in vivo reactions
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BMCBI
2010
259views more  BMCBI 2010»
13 years 2 months ago
Rule-based spatial modeling with diffusing, geometrically constrained molecules
Background: We suggest a new type of modeling approach for the coarse grained, particle-based spatial simulation of combinatorially complex chemical reaction systems. In our appro...
Gerd Gruenert, Bashar Ibrahim, Thorsten Lenser, Ma...
MICCAI
2002
Springer
14 years 8 months ago
Regularized Stochastic White Matter Tractography Using Diffusion Tensor MRI
The development of Diffusion Tensor MRI has raised hopes in the neuro-science community for in vivo methods to track fiber paths in the white matter. A number of approaches have be...
Mats Björnemo, Anders Brun, Ron Kikinis, Carl...
CORR
2010
Springer
174views Education» more  CORR 2010»
13 years 7 months ago
Hybrid Numerical Solution of the Chemical Master Equation
We present a numerical approximation technique for the analysis of continuous-time Markov chains that describe networks of biochemical reactions and play an important role in the ...
Thomas A. Henzinger, Maria Mateescu, Linar Mikeev,...
BMCBI
2004
323views more  BMCBI 2004»
13 years 7 months ago
Biochemical Network Stochastic Simulator (BioNetS): software for stochastic modeling of biochemical networks
Background: Intrinsic fluctuations due to the stochastic nature of biochemical reactions can have large effects on the response of biochemical networks. This is particularly true ...
David Adalsteinsson, David McMillen, Timothy C. El...
FPGA
2004
ACM
174views FPGA» more  FPGA 2004»
14 years 1 months ago
A compiled accelerator for biological cell signaling simulations
The simulation of large systems of biochemical reactions is a key part of research into molecular signaling and information processing in biological cells. However, it can be impr...
John F. Keane, Christopher Bradley, Carl Ebeling