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GECCO
2006
Springer
130views Optimization» more  GECCO 2006»
13 years 11 months ago
Pairwise sequence comparison for fitness evaluation in evolutionary structural software testing
Evolutionary algorithms are among the metaheuristic search methods that have been applied to the structural test data generation problem. Fitness evaluation methods play an import...
H. Turgut Uyar, A. Sima Etaner-Uyar, A. Emre Harma...
NC
2002
196views Neural Networks» more  NC 2002»
13 years 7 months ago
Beyond second-order statistics for learning: A pairwise interaction model for entropy estimation
Second order statistics have formed the basis of learning and adaptation due to its appeal and analytical simplicity. On the other hand, in many realistic engineering problems requ...
Deniz Erdogmus, José Carlos Príncipe...
COCOA
2007
Springer
14 years 1 months ago
A Lagrangian Relaxation Approach for the Multiple Sequence Alignment Problem
Abstract. We present a branch-and-bound (bb) algorithm for the multiple sequence alignment problem (MSA), one of the most important problems in computational biology. The upper bou...
Ernst Althaus, Stefan Canzar
CIS
2004
Springer
14 years 1 months ago
Algorithms for Loosely Constrained Multiple Sequence Alignment
For finding accurate and biologically meaningful multiple sequence alignment, it is required to consider a loosely constrained version of multiple sequence alignment. This paper is...
Bin Song, Fengfeng Zhou, Guoliang Chen
BMCBI
2008
122views more  BMCBI 2008»
13 years 7 months ago
Grammar-based distance in progressive multiple sequence alignment
Background: We propose a multiple sequence alignment (MSA) algorithm and compare the alignment-quality and execution-time of the proposed algorithm with that of existing algorithm...
David J. Russell, Hasan H. Otu, Khalid Sayood