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» Storage and Retrieval of Individual Genomes
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CIKM
2009
Springer
14 years 15 days ago
Suffix trees for very large genomic sequences
A suffix tree is a fundamental data structure for string searching algorithms. Unfortunately, when it comes to the use of suffix trees in real-life applications, the current metho...
Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upt...
BMCBI
2010
108views more  BMCBI 2010»
13 years 6 months ago
BIGSdb: Scalable analysis of bacterial genome variation at the population level
Background: The opportunities for bacterial population genomics that are being realised by the application of parallel nucleotide sequencing require novel bioinformatics platforms...
Keith A. Jolley, Martin C. J. Maiden
CORR
2010
Springer
95views Education» more  CORR 2010»
13 years 8 months ago
A Generic Storage API
We present a generic API suitable for provision of highly generic storage facilities that can be tailored to produce various individually customised storage infrastructures. The p...
Graham N. C. Kirby, Evangelos Zirintsis, Alan Dear...
HOTI
2005
IEEE
14 years 2 months ago
Design of Randomized Multichannel Packet Storage for High Performance Routers
High performance routers require substantial amounts of memory to store packets awaiting transmission, requiring the use of dedicated memory devices with the density and capacity ...
Sailesh Kumar, Patrick Crowley, Jonathan S. Turner
GIR
2006
ACM
14 years 2 months ago
Retrieval of Similar Travel Routes Using GPS Tracklog Place Names
GPS tracklogs provide a valuable record of routes travelled. In this paper we describe initial experiments exploring the use of text information retrieval techniques for the locat...
Aiden R. Doherty, Cathal Gurrin, Gareth J. F. Jone...